Index _ | A | B | C | D | E | F | G | H | I | L | M | N | P | R | S | T | W _ __init__() (papylio.Experiment method) (papylio.File method) (papylio.Movie method) A analyze_dwells() (in module papylio.analysis.dwell_time_analysis) apply_corrections() (papylio.Movie method) auto_bin_size_for_discrete_data() (in module papylio.analysis.dwell_time_analysis) B BIC() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) BIC_histogram() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) bitdepth (papylio.Movie property) boundaries_metric (papylio.Movie property) boundaries_stage (papylio.Movie property) bytes_per_frame (papylio.Movie property) C cdf() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) cdf_fit() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) cdf_untruncated() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) channel_arrangement (papylio.Movie property) channel_columns (papylio.Movie property) channel_indices (papylio.Movie property) channel_rows (papylio.Movie property) configuration (papylio.Movie property) corrections (papylio.Movie property) corrections_filepath (papylio.Movie property) D data_type (papylio.Movie property) dataset_to_parameters() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) determine_general_background_correction() (papylio.Movie method) determine_spatial_background_correction() (papylio.Movie method) determine_temporal_background_correction() (papylio.Movie method) E empirical_cdf() (in module papylio.analysis.dwell_time_analysis) Experiment (class in papylio) ExponentialDistribution (class in papylio.analysis.dwell_time_analysis) F File (class in papylio) fit_dwell_times() (in module papylio.analysis.dwell_time_analysis) flatten_channels() (papylio.Movie method) frame_indices (papylio.Movie property) frames_to_xarray_dataarray() (papylio.Movie method) G get_channel() (papylio.Movie method) get_channel_from_name() (papylio.Movie method) get_channel_indices_from_names() (papylio.Movie method) get_channels_from_names() (papylio.Movie method) get_illumination_from_name() (papylio.Movie class method) get_illumination_indices_from_names() (papylio.Movie class method) get_illuminations_from_names() (papylio.Movie class method) H height_metric (papylio.Movie property) hist_fit() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) histogram_fit() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) I illumination_arrangement (papylio.Movie property) illumination_index_per_frame (papylio.Movie property) illumination_indices (papylio.Movie property) illumination_indices_in_movie (papylio.Movie property) illuminations (papylio.Movie attribute) image_info_from_filename() (papylio.Movie class method) image_info_to_filename() (papylio.Movie class method) L likelihood() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) loglikelihood() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) loglikelihood_binned() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) M make_average_image() (papylio.Movie method) make_maximum_projection() (papylio.Movie method) make_projection_image() (papylio.Movie method) make_projection_images() (papylio.Movie method) maximum_likelihood_estimation() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) mle() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) module papylio.analysis.dwell_time_analysis Movie (class in papylio) N negative_loglikelihood() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) negative_loglikelihood_binned() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) number_of_channels (papylio.Movie property) number_of_channels_per_frame (papylio.Movie property) number_of_illuminations (papylio.Movie property) number_of_illuminations_in_movie (papylio.Movie property) P P_and_k_from_parameters() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) papylio.analysis.dwell_time_analysis module parameter_guess() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) parameter_names (papylio.analysis.dwell_time_analysis.ExponentialDistribution property) parameter_names_full (papylio.analysis.dwell_time_analysis.ExponentialDistribution property) parameters_full() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) parameters_to_dataset() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) pdf() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) pdf_binned() (papylio.analysis.dwell_time_analysis.ExponentialDistribution method) pixel_to_stage_coordinates_transformation (papylio.Movie property) pixels_per_frame (papylio.Movie property) plot_dwell_analysis() (in module papylio.analysis.dwell_time_analysis) plot_dwell_analysis_state() (in module papylio.analysis.dwell_time_analysis) plot_dwell_time_histogram() (in module papylio.analysis.dwell_time_analysis) plot_empirical_cdf() (in module papylio.analysis.dwell_time_analysis) R read_frame() (papylio.Movie method) read_frames() (papylio.Movie method) read_header() (papylio.Movie method) reset_corrections() (papylio.Movie method) S save_corrections() (papylio.Movie method) saveas_tif() (papylio.Movie method) separate_channels() (papylio.Movie method) show() (papylio.Movie method) show_correction() (papylio.Movie method) T time (papylio.Movie property) type_dict() (papylio.Movie class method) W width_metric (papylio.Movie property)
