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Papylio documentation
===========================

papylio is a package for single-molecule data analysis.

Current functionality
---------------------

Data extraction from single-molecule fluorescence images:

 - Peak localization
 - Emission channel alignment
 - Fluorescence intensity and FRET trace extraction
 - Trace selection
 - Trace classification
 - Kinetic parameter extraction

Getting started
---------------
.. toctree::
   :maxdepth: 2

   Installation
   Getting started
   User guide <user_guide/index>
   Examples <examples/index>
   Sequencing <sequencing/index>
   GUI
   API reference
   Contributing


:class:`papylio.experiment.Experiment`

Indices and tables
------------------

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`