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papylio 0.10.2+gae77d8d78 documentation - Home
  • Installation
  • Getting started
  • User guide
    • Channel mapping
    • Background subtraction
    • Molecule localization
    • Trace extraction
    • Trace visualization
    • Trace selection
    • Trace classification
    • Hidden Markov modelling
    • Dwell time analysis
      • Maximum likelihood estimation
      • Histogram fit
      • Cumulative density function fit
    • Metadata and logging
  • Examples
    • Copy coordinates between files
    • Save dataset with selected molecules
    • Merge file datasets
    • Plot traces overview
    • Combining two coordinate sets
  • SPARXS
    • 1. Single-molecule data analysis
    • 2. Sequence data analysis
    • 3. Aligning datasets
    • 4. Coupling datasets
    • 5. Single-molecule data analysis 2
    • 6. Properties per sequence
    • Global alignment
  • GUI
  • API reference
  • Contributing
  • .rst

API reference

Contents

  • API reference
  • Main classes
  • Lower-level function

API reference#

Main classes#

papylio.Experiment(*args, **kwargs)

papylio.File(*args, **kwargs)

papylio.Movie(filepath[, rot90])

Base class for microscopy movie/image stack handling.

Lower-level function#

papylio.analysis.dwell_time_analysis

Dwell-time distribution analysis and fitting utilities.

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GUI

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papylio.Experiment

Contents
  • API reference
  • Main classes
  • Lower-level function

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